If you booked through EVA only they can make the changes. Even though you are flying Air Canada and it is their cancellation by booking through EVA they are acting as agent by issuing the ticket.
Might I suggest since the AC flight was a red-eye that you try getting EVA to put you on Continental to Newark. CO and EVA have a ticketing and mileage partnership and CO has a red-eye from SFO to EWR that departs 1030 PM which is a good connection for the EVA flight from Taipei arriving 630 PM. You would even have time for dinner at the airport. Once in EWR the following morning you could easily connect to another CO or AC flight to Toronto.
Good luck.
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